Transcriptome Assembly

SPATA: A highly accurate GUI tool for de novo transcriptome assembly

Transcript quantification using RNA-seq is central to contemporary and future transcriptomics research. The existing tools are useful but have much room for improvement. We present a new statistical model, a fast yet accurate transcript …

SPATA: A seeding and patching algorithm for de novo transcriptome assembly

RNA-seq reads are sampled from the underlying human transcriptome sequence, consisting of hundreds of thousands of mRNA transcripts. De novo transcriptome reconstruction from RNA-seq reads is a promising approach but facing algorithmic and …