Bioinformatics Lab @ Auburn University

Welcome to the Bioinformatics Lab at Auburn University

Room 2323, Shelby Center, Auburn University

We are currently hiring multiple Full-time Ph.D. student positions. Click for more information.

People

Lab Director

Avatar

Tin Nguyen

Associate Professor

Data Science, Machine Learning, Disease Subtyping, Pathway Analysis, Single-cell Analysis

Current PhD Students

Avatar

Ha Nguyen

PhD Student

Avatar

Hung Nguyen

PhD Student

Clustering, Disease Subtyping

Avatar

Quang-Huy Nguyen

PhD Student

Avatar

Dao Tran

PhD Student

Avatar

Mustafa Solmaz

PhD Student

PhD Alumni

Avatar

Duc Tran

Bioinformatics Scientist

Genetic Algorithms, Single Cell, 3D genomics

Avatar

Bang Tran

Assistant Professor

scRNA Imputation, Single-cell Analysis

Master Alumni

Avatar

Alena Lee

Master Student

Avatar

Monikrishna Roy

Software Engineer

Avatar

Sangam Shrestha

Senior Data Scientist

Machine Learning, Bioinformatics

Undergraduate Alumni

Avatar

Brian Marks

Undergraduate Student

Avatar

Nina Hees

Undergraduate Student

Avatar

Jesus Casillas Manzano

Undergraduate Student

Avatar

Mark Minkoff

Undergraduate Student

Video compression with GAN and transformer models

Avatar

Monte McRae

Undergraduate Student

News

Nhóm nghiên cứu của TS. Nguyễn Chí Tín (Đại học Nevada, Reno, Mỹ) đã phát triển được mô hình học sâu scCAN có khả năng phân cụm hàng triệu dữ liệu tế bào trong một thời gian ngắn với độ chính xác cao, nhờ đó có thể tìm ra những tế bào hiếm gặp trong mẫu sinh thiết ung thư một cách hiệu quả hơn. Tìm lối đi giữa mênh mông dữ liệu Sự phát triển của công nghệ là một điều mà có lẽ đa phần chúng ta đều mong muốn.

Seven University of Nevada, Reno faculty members have received a 2022 CAREER Award. This latest cohort follows the eight awards received by faculty in 2021, the most ever in a single year at the University.

Assistant Professor Tin Nguyen is set to begin NSF-funded research this summer that could advance our understanding of cancer.

Assistant Professor Tin Nguyen and his lab have developed software to help life scientists efficiently analyze single-cell data using machine learning.

Outreach

Great Basin College Bioinformatics Workshop 2022

Three-Day Workshop: Introduction to Bioinformatics Techniques

Great Basin College Bioinformatics Workshop 2021

Two-Day Workshop: Introduction to Bioinformatics Techniques

Pack Research Experience Program Mentoring

A new research award that directly benefits underrepresented students with an academic standing of freshman or sophomore.

Recent Publications

A robust and accurate single-cell data trajectory inference method using ensemble pseudotime

Background

The advance in single-cell RNA sequencing technology has enhanced the analysis of cell development by profiling …

ViT-DeiT: An Ensemble Model for Breast Cancer Histopathological Images Classification

Breast cancer is the most common cancer in the world and the second most common type of cancer that causes death in women. The timely …

DWEN: A novel method for accurate estimation of cell type compositions from bulk data samples

Advances in single-cell RNA sequencing (scRNAseq) technologies have allowed us to study the heterogeneity of cell populations. The cell …

Software

*

scCAN

A R package for single-cell data clustering

scISR

A R package for single-cell data imputation

Thyme

ThYme: A comprehensive database of the Thioester-active enzYmes

SMRT

A web application for cancer subtyping and big data analysis

CPA

CPA: a web-based platform for consensus pathway analysis and interactive visualization

scDHA

A R package for single-cell analysis

PINSPlus

A R package for data integration and disease subtyping

SCFA

A R package for cancer subtyping

FAT-PTM

A database for examining post-translational modification data

BLMA

Suit of tools for bi-level meta-analysis.

Contact