Bioinformatics Lab
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Sorin Draghici
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RCPA
RCPA: An Open-Source R Package for Data Processing, Differential Analysis, Consensus Pathway Analysis, and Visualization
DeconBenchmark
Fourteen years of cellular deconvolution: methodology, applications, technical evaluation and outstanding challenges
A novel approach for predicting upstream regulators (PURE) that affect gene expression
SMRT
CPA
CPA: a web-based platform for consensus pathway analysis and interactive visualization
NBIA: a network-based integrative analysis framework – applied to pathway analysis
Integrated Cancer Subtyping using Heterogeneous Genome-Scale Molecular Datasets
Identifying Significantly Impacted Pathways: A Comprehensive Review and Assessment
A comprehensive survey of tools and software for active subnetwork identification
A Multi-Cohort and Multi-Omics Meta-Analysis Framework to Identify Network-Based Gene Signatures
PINSPlus: A tool for tumor subtype discovery in integrated genomic data
Network‐Based Approaches for Pathway Level Analysis
A survey of the approaches for identifying differential methylation using bisulfite sequencing data.
A Systems Biology Approach for Unsupervised Clustering of High-Dimensional Data
MicroRNA-augmented pathways (mirAP) and their applications to pathway analysis and disease subtyping
TOMAS: A novel TOpology-aware Meta-Analysis approach applied to System biology
Overcoming the matched-sample bottleneck: an orthogonal approach to integrate omic data
A novel bi-level meta-analysis approach: applied to biological pathway analysis
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